After the end of his career, Isakovs became the sporting director of his former club Daugava Daugavpils. On 22 October 2012, he was appointed head of Daugavpils Sport administration.[1] Isakovs' specialty is also a sports teacher.
After retiring from professional football Isakovs began playing futsal. He participated at the Daugavpils futsal championship, winning the gold medals in the 2009–10 season.